PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53697.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 248aa    MW: 27267.6 Da    PI: 8.6869
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53697.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.81.1e-142501457
                  HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  MLOC_53697.2  2 ILEEMYRGgLRTPTASQIQQITAHLahygRIEGKNVFYWFQNHKARDRQ 50
                  8******99*************************************996 PP
2Wus_type_Homeobox925.5e-301511464
  Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +iLee+y+ GlrtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk
       MLOC_53697.2  1 MILEEMYRGGLRTPTASQIQQITAHLAHYGRIEGKNVFYWFQNHKARDRQK 51
                       69************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.604151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-4250IPR009057Homeodomain-like
SuperFamilySSF466891.8E-6251IPR009057Homeodomain-like
PfamPF000462.7E-12250IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MILEEMYRGG LRTPTASQIQ QITAHLAHYG RIEGKNVFYW FQNHKARDRQ KLRRRLCMSH  60
HLLSCAHYYA AAKAGQYHHQ QQQLLGGAAV PPPVLQHQHQ QPQPQQQYYS SPCPGGGHDH  120
HLLPTTVPAA AAYAAAAAAG YGYPLAAVPA SRCADPSLSP PNTPLSFHHQ GGGVVVGSPE  180
YSLGRLGSFQ VVEDTCRPSR YEQQQPQHLA AATEDQAASV TATGLFWRPV RLQTLDLFPG  240
AIKEEQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53697.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-78BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-78KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164197.11e-121putative WUSCHEL-related homeobox 2
TrEMBLA0A287ELS50.0A0A287ELS5_HORVV; Uncharacterized protein
STRINGMLOC_53697.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-30WOX family protein