PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5372.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 232aa    MW: 24250 Da    PI: 7.4963
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5372.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20109143135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  MLOC_5372.1 109 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 143
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-20103160IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.391103139IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-14104144No hitNo description
Gene3DG3DSA:3.30.50.102.6E-17107143IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.25E-13108140No hitNo description
PROSITE patternPS003440109134IPR000679Zinc finger, GATA-type
PfamPF003205.1E-18109143IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSMLFAAAPG DHHYYTKQCV DDGSYATYGG SVDCTLSLGT  60
PSTRRAEAGV RAPAAGLPWE AVPSCNGRQD IGPARADQSN AGAASARRCA NCDTTSTPLW  120
RNGPRGPKSL CNACGIRYKK EERRAAAAAA APTALASESG IEYAYGYARQ QQQQQQQQWG  180
CYGPAVAKAA SYGMFGDAAA EDGPCLPWGL GVMPSSPAFG SVREMTSLFQ YY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-130HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184096.11e-144GATA transcription factor 20-like
TrEMBLM0WQ581e-168M0WQ58_HORVV; Uncharacterized protein
STRINGMLOC_5372.11e-168(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.15e-28GATA transcription factor 20