PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5375.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 146aa    MW: 16165.2 Da    PI: 9.4329
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5375.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009e-324696151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+
  MLOC_5375.3 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 96
                 79***********************************************95 PP
2K-box20.71.7e-08114146436
        K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqR 36 
                  s++   ++e +a+++qqe++kL+++i++Lq+++R
  MLOC_5375.3 114 SNS-GtVAEVNAQYYQQESSKLRQQISSLQNSNR 146
                  233.25999*********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.7113898IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-413897IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-3339110IPR002100Transcription factor, MADS-box
CDDcd002656.64E-4639112No hitNo description
PROSITE patternPS0035004094IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-334060IPR002100Transcription factor, MADS-box
PfamPF003194.0E-274794IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-336075IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-337596IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MMSMMADLSC GASGVTVNDH QLTAPAPEES AVAGSEKMGR GRIEIKRIEN TTNRQVTFCK  60
RRNGLLKKAY ELSVLCDAEV ALVVFSSRGR LYEYSNNSVK ATIERYKKAN SDTSNSGTVA  120
EVNAQYYQQE SSKLRQQISS LQNSNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-2238125191MEF2C
5f28_B4e-2238125191MEF2C
5f28_C4e-2238125191MEF2C
5f28_D4e-2238125191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5375.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745800.0AK374580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069K17.
GenBankEU5570500.0EU557050.1 Hordeum vulgare MIKC-type MADS-box transcription factor WM29B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153239.11e-101MADS-box transcription factor 3-like isoform X2
SwissprotQ407041e-69MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A287KHZ31e-102A0A287KHZ3_HORVV; Uncharacterized protein
TrEMBLA0A453ED141e-102A0A453ED14_AEGTS; Uncharacterized protein
TrEMBLM0WQ961e-102M0WQ96_HORVV; Uncharacterized protein
STRINGMLOC_5375.21e-102(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]