PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53840.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 119aa    MW: 13524.2 Da    PI: 9.3341
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53840.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.8e-311871255
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  pr+rWt+eLH++F++av+ LGG+++AtPk+il+lm+vkg++++h+kSHLQ+YR+
  MLOC_53840.2 18 PRMRWTEELHRQFIDAVDCLGGQDEATPKRILQLMGVKGVSISHIKSHLQMYRS 71
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6961474IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-291472IPR009057Homeodomain-like
SuperFamilySSF466891.7E-171672IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-251871IPR006447Myb domain, plants
PfamPF002497.3E-91970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MRGFERRGVR QYNRSEEPRM RWTEELHRQF IDAVDCLGGQ DEATPKRILQ LMGVKGVSIS  60
HIKSHLQMYR SSSSGGSSNP PHTPVNRRQD RCCIDGNITA TSASDMIDVP SYPVFRHGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-191772156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-191772156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-191772156Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-191772156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-191772257Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53840.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716052e-79AK371605.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178887.14e-62probable transcription factor KAN4 isoform X1
SwissprotQ700D92e-24MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A287XQ501e-83A0A287XQ50_HORVV; Uncharacterized protein
TrEMBLA0A287XQH99e-84A0A287XQH9_HORVV; Uncharacterized protein
STRINGMLOC_53840.25e-85(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.15e-26G2-like family protein