PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53958.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 148aa    MW: 16763.9 Da    PI: 9.697
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53958.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.81.4e-291871255
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  pr+rWt+eLH++F++av+ LGG+++AtPk+il+lm+ kg+ ++h+kSHLQ+YR+
  MLOC_53958.1 18 PRMRWTEELHRQFIDAVDCLGGQDEATPKRILQLMGAKGVNISHIKSHLQMYRS 71
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7171474IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-281473IPR009057Homeodomain-like
SuperFamilySSF466894.84E-161674IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-231871IPR006447Myb domain, plants
PfamPF002499.4E-81970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MRGFERRGVR QYNRSEEPRM RWTEELHRQF IDAVDCLGGQ DEATPKRILQ LMGAKGVNIS  60
HIKSHLQMYR SSSRSSTTNS SPHASVNRRQ DHCVNGNDMT TTASDGVNAP SYTVFRRHHC  120
STLSACQMRV LPLIGSSVHF LINVYICA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-181972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-181972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-181972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-181972356Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-181972457Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53958.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519402e-91JF951940.1 Aegilops speltoides clone TaMYB57 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178887.12e-63probable transcription factor KAN4 isoform X1
TrEMBLM0WR271e-107M0WR27_HORVV; Uncharacterized protein
STRINGMLOC_53958.11e-108(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-24G2-like family protein