PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53966.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LSD
Protein Properties Length: 100aa    MW: 10159 Da    PI: 7.0924
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53966.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1451.8e-143054125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  C+gCr+lL+YP+GA+sV+Ca+C tV
  MLOC_53966.5 30 CSGCRNLLMYPAGATSVCCAVCSTV 54
                  ***********************99 PP
2zf-LSD147.72.6e-156993125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  CggC+tlL+Y rGA+sV+C++C+tV
  MLOC_53966.5 69 CGGCHTLLMYIRGATSVQCSCCHTV 93
                  ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.2E-142757IPR005735Zinc finger, LSD1-type
PfamPF069439.6E-123054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-156695IPR005735Zinc finger, LSD1-type
PfamPF069437.1E-136993IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPFTPPAP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEGM
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53966.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492581e-164AK249258.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf27e22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281099.18e-54PREDICTED: protein LOL1 isoform X2
RefseqXP_010663767.18e-54PREDICTED: protein LOL1 isoform X2
RefseqXP_010663773.18e-54PREDICTED: protein LOL1 isoform X2
RefseqXP_010663776.18e-54PREDICTED: protein LOL1 isoform X2
RefseqXP_019079971.17e-54PREDICTED: protein LSD1 isoform X1
SwissprotQ0J7V91e-48LSD1_ORYSJ; Protein LSD1
TrEMBLA0A287G7J73e-64A0A287G7J7_HORVV; Uncharacterized protein
STRINGTraes_1BL_332C278BD.22e-64(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-32lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]