PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_53973.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25511.3 Da    PI: 9.4894
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_53973.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.69.2e-251056248
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                  rien   rqvtf+kRr+g+lKKA ELSvLCda++ +iifs +gkly+
  MLOC_53973.2 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDADIGIIIFSAHGKLYD 56
                  8********************************************97 PP
2K-box40.21.5e-14901611787
         K-box  17 lqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                    +qe+  Lk+ei+ Lq+ +R + G+  +  +++ eL+ Le+ Le  + +iRs K+++++++i+ l+ k  +l
  MLOC_53973.2  90 PKQEAMVLKQEIDLLQKGLRYIYGNRANeHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSKASQL 161
                   589*********************998626**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.576161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-27178IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.32E-38279No hitNo description
PRINTSPR004041.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.8E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.73487196IPR002487Transcription factor, K-box
PfamPF014862.9E-1790161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MARGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSA HGKLYDLATT  60
GTMDGLIERY KSASGEGMTA DGCGDQRVDP KQEAMVLKQE IDLLQKGLRY IYGNRANEHM  120
NVDELNALER YLEIWMFNIR SAKMQIMIQE IQALKSKASQ LITLQIYKYP TIIDNLLKVE  180
LDSLYAGRHV ESCQRNSPGK DSRTAWTDRR RHDYSRSAEW AF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16170169MEF2C
5f28_B2e-16170169MEF2C
5f28_C2e-16170169MEF2C
5f28_D2e-16170169MEF2C
6byy_A2e-16174173MEF2 CHIMERA
6byy_B2e-16174173MEF2 CHIMERA
6byy_C2e-16174173MEF2 CHIMERA
6byy_D2e-16174173MEF2 CHIMERA
6bz1_A2e-16174173MEF2 CHIMERA
6bz1_B2e-16174173MEF2 CHIMERA
6bz1_C2e-16174173MEF2 CHIMERA
6bz1_D2e-16174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_53973.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3704680.0AK370468.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111D24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147397.11e-112MADS-box transcription factor 26 isoform X1
RefseqXP_020147398.11e-112MADS-box transcription factor 26 isoform X2
SwissprotA2YQK91e-102MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-102MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A287WYF91e-163A0A287WYF9_HORVV; Uncharacterized protein
STRINGMLOC_53973.11e-112(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-58AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]