PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54108.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 350aa    MW: 39575.8 Da    PI: 7.6836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54108.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-0693113626
                   -SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                   C +f+  G C +G+ C+FaH+
  MLOC_54108.1  93 CFDFLNKGKCERGPECRFAHS 113
                   6678888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00165582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8455583IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55984IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-66083IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-688116IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-489114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7792115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-692116IPR000571Zinc finger, CCCH-type
PfamPF046772.3E-35126243IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.109.6E-5131224IPR011146HIT-like domain
SuperFamilySSF541977.94E-8134224IPR011146HIT-like domain
PfamPF046765.2E-17270347IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSSADILARP PNATLSPYAA PAKSVHVEDT PKRPAESTDL QYWRYDVKRQ RQGQADGSLL  60
CFKYTSSGSC PRGSKCNFRH DEEAREHCQR NVCFDFLNKG KCERGPECRF AHSLTEEATL  120
KDAKPRSERR RVESSCWFCL SSPDVESHLV ISIGDGYYCA LAKGPLVPDH VLMIPVEHFP  180
TTITMPVEPE AELRRYKNSL SKYFKKQGKA AVYFEWVSQQ SRHANLQAVP LPLSKAANVK  240
KIFHLAAQRL GFEFSVVNPD GDANQGRELL RSQYDGKSGL FYVELPDGTL LLHMIDSGEK  300
FPAQFGREVL AGLLSMADRA DWRNCKLSKE EEVKMVDDFK QGFREFDPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U1e-11136347675887CWF19-like protein 2
6id1_U1e-11136347675887CWF19-like protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3701430.0AK370143.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2105K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156088.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A287RCN30.0A0A287RCN3_HORVV; Uncharacterized protein
TrEMBLA0A287RCS10.0A0A287RCS1_HORVV; Uncharacterized protein
TrEMBLA0A287RD080.0A0A287RD08_HORVV; Uncharacterized protein
STRINGMLOC_54108.20.0(Hordeum vulgare)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]