PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54108.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 608aa    MW: 66987.9 Da    PI: 7.0846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54108.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-06351371626
                   -SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                   C +f+  G C +G+ C+FaH+
  MLOC_54108.2 351 CFDFLNKGKCERGPECRFAHS 371
                   6678888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073809.48E-4013239No hitNo description
SMARTSM003560.0016313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845313341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5317342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-6318341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5346374IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4347372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77350373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5350374IPR000571Zinc finger, CCCH-type
PfamPF046776.2E-35384501IPR006768Cwf19-like, C-terminal domain-1
Gene3DG3DSA:3.30.428.102.5E-4389482IPR011146HIT-like domain
SuperFamilySSF541972.08E-7392482IPR011146HIT-like domain
PfamPF046761.3E-16528605IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAAAPSPAPP RILLAGDAHG RLHQLFKRVK SVNQSTGPFH ALLCVGQFFP PEVPEGDSPP  60
GDVADYLEGR AAVPIPTYFT GDYGPTAPRL LSKAAADARG FNPGGIEICP NLFWLRGSAL  120
FNLHGLSVAY LSGRKGLGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP AGVVDGTDTS  180
KVSPQVLDSQ GYDPVVAELV AEIKPRYHIA GTKGIFYARE PYVNDSSPHV TRFIGLANVG  240
NKEKQKFIHA ISPTPASTMS SADILARPPN ATLSPYAAPA KSVHVEDTPK RPAESTDLQY  300
WRYDVKRQRQ GQADGSLLCF KYTSSGSCPR GSKCNFRHDE EAREHCQRNV CFDFLNKGKC  360
ERGPECRFAH SLTEEATLKD AKPRSERRRV ESSCWFCLSS PDVESHLVIS IGDGYYCALA  420
KGPLVPDHVL MIPVEHFPTT ITMPVEPEAE LRRYKNSLSK YFKKQGKAAV YFEWVSQQSR  480
HANLQAVPLP LSKAANVKKI FHLAAQRLGF EFSVVNPDGD ANQGRELLRS QYDGKSGLFY  540
VELPDGTLLL HMIDSGEKFP AQFGREVLAG LLSMADRADW RNCKLSKEEE VKMVDDFKQG  600
FREFDPAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54108.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3701430.0AK370143.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2105K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156088.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLF2E1X20.0F2E1X2_HORVV; Predicted protein
STRINGMLOC_54108.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]