PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54108.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 127aa    MW: 14407.1 Da    PI: 8.6899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54108.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-0667811226
                  TS--TTTTT-SS-SS CS
       zf-CCCH 12 tGtCkyGdrCkFaHg 26
                  +G C++G++C+F H+
  MLOC_54108.4 67 SGSCPRGSKCNFRHD 81
                  7***********997 PP
2zf-CCCH185.2e-0693113626
                   -SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                   C +f+  G C +G+ C+FaH+
  MLOC_54108.4  93 CFDFLNKGKCERGPECRFAHS 113
                   6678888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00165582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8455583IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-65984IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-76083IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-46081IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-688116IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-489114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-691116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7792115IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSSADILARP PNATLSPYAA PAKSVHVEDT PKRPAESTDL QYWRYDVKRQ RQGQADGSLL  60
CFKYTSSGSC PRGSKCNFRH DEEAREHCQR NVCFDFLNKG KCERGPECRF AHSLTEEATL  120
KDAKPRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54108.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3701430.0AK370143.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2105K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156088.15e-82zinc finger CCCH domain-containing protein 59
SwissprotQ69NK82e-68C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A287RD126e-90A0A287RD12_HORVV; Uncharacterized protein
STRINGMLOC_54108.21e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-06C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]