PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5414.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 649aa    MW: 72142.4 Da    PI: 6.1638
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5414.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.1e-094074441954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  MLOC_5414.1 407 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 444
                  664459******************************88 PP
2BELL118.23.9e-38270341172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+qelq+k akL+ +l+eVd++Yk+y++q+q v++sF++vag gsakpYt++Al++iSrhFrcLkdai +qi
  MLOC_5414.1 270 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQNVVASFDMVAGPGSAKPYTAVALQTISRHFRCLKDAINDQI 341
                  689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-54197339IPR006563POX domain
PfamPF075263.4E-50203337IPR006563POX domain
PROSITE profilePS5007112.357385448IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-28387458IPR009057Homeodomain-like
SMARTSM003893.0E-9388452IPR001356Homeobox domain
CDDcd000864.42E-12388449No hitNo description
SuperFamilySSF466894.28E-17389455IPR009057Homeodomain-like
PfamPF059201.0E-17405444IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MATYYSSPGS ERESQDMYSR DPGNASYPMS SALGNLLYLN NNPSSGPYTA EFGGILQTQQ  60
NFMEMPGHGH HPAMSQDSSA RESHDMLASH HGQRPFGHVK DMKDEMLMHM MDGARSGGGE  120
LIHDDPHNGA QFEFGVLNNH DSSDVPVGQG QGLSLSLNTQ ILAPSLPYWS IKPDMLTPNS  180
YQESLRIDDI RMKNMQSEAS RAIRHSRYLK AAQEVLDEVV NVWKNIKRKA QKEQAEPGKA  240
DGKESDGGPK SEGASQESGA NAAPELSTAE KQELQNKMAK LMAMLDEVDR KYKHYYHQMQ  300
NVVASFDMVA GPGSAKPYTA VALQTISRHF RCLKDAINDQ INVIRKKLGE EENSSGKEGK  360
LTRLRYIDQQ LRQQRAFQQY GMIPQNAWRP QRGLPENSVT VLRAWLFEHF LHPYPKDSEK  420
LMLARQTGLT RSQISNWFIN ARVRLWKPMI EDMYKEETGD LEQDSNSSSD NVPRSKNKVA  480
SSEENEDLKN ARARVCETSQ LSESRASIGT MIVGAAPVGF QHAEANPDDS FMNLMMKEQR  540
SGEADGGLLL HNAVAQHSDE NARFMAYHLA ELGRYGNGNV SLTLGLQHPG SGLSVPNAQA  600
HFPGVGDDDI YNAGAPLGVG IASSDYESLN QMDQRQRFEQ SPLLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16394451158Homeobox protein Meis1
4xrs_B5e-16394451158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5414.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705760.0AK370576.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196287.10.0BEL1-like homeodomain protein 7
RefseqXP_020196288.10.0BEL1-like homeodomain protein 7
RefseqXP_020196289.10.0BEL1-like homeodomain protein 7
RefseqXP_020196291.10.0BEL1-like homeodomain protein 7
TrEMBLM0WS120.0M0WS12_HORVV; Uncharacterized protein
STRINGMLOC_5414.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-109BEL1-like homeodomain 6