PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54308.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 170aa    MW: 19214.4 Da    PI: 7.7795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54308.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-057597123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y C  Cgk+F  + + ++H +++
  MLOC_54308.2 75 YACRRCGKRFAVRGDWRTHEKNC 97
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-76195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.46E-76195No hitNo description
PROSITE profilePS501578.7047595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MHMWGHGSQY RKGSESLRGA VTVGTAAPPP SLLRLPCYCC AEGCRNNIDH PRARPLKDFR  60
TLQTHYRRKH GARPYACRRC GKRFAVRGDW RTHEKNCGKL WFCVCGSDFK HKRSLKDHVR  120
SFGGGHAPHI VESVAVDEDE DEDDEHDDGD QLHLYDENGN AGDGSDMVLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54308.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172443.11e-107zinc finger protein WIP6-like
SwissprotQ8W0304e-73ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLF2EAX41e-123F2EAX4_HORVV; Predicted protein
STRINGMLOC_54308.11e-124(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-75C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]