PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54435.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 365aa    MW: 38965.4 Da    PI: 7.5305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54435.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13100150255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++ah  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +v+YIk+Lq
  MLOC_54435.1 100 KTAHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 150
                   689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.63498149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1799176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.71E-14100154No hitNo description
Gene3DG3DSA:4.10.280.107.3E-14100162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10100150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-11104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGDALCDQLL VDVDGEFQLP TDAEDLFSIL ETWEDCVNGA AAALSPTAGA GSGGGLLGGS  60
APGNKGSSKR RARQGECDGI SHEHKRQKCS PEEGGGAAPK TAHITVERNR RKQMNEHLTV  120
LRSLMPCFYV KRGDQASIIG GVVDYIKELQ QVKQSLEAKK QRKAYTEHVL SPRPPPSSYS  180
PRLPLSPLHK STPPLSPLLR STPPLSPRLA VPISPARTPP TPGSPYKLRP LPPPISGSTY  240
VSPAMTPTGY EPGSSYLPSL DAIAAELSVY ANRQALQLPP TDLLPDVRVE FAGANLVLKT  300
VSHRAPGQAV KIIAALESRA PALEILHAKI STIDDTDVNA FTVKIGIECS LSAEELVQEI  360
QQTFS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176650.10.0transcription factor SPEECHLESS-like
TrEMBLM0WT480.0M0WT48_HORVV; Uncharacterized protein
STRINGMLOC_54435.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-35bHLH family protein