PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54441.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 269aa    MW: 28449.2 Da    PI: 9.594
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54441.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1990144256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  MLOC_54441.1  90 RKKLRLSKDQAAVLEECFKTHHTLTPKQKLALANSLGLRPRQVEVWFQNRRARTK 144
                   788899***********************************************98 PP
2HD-ZIP_I/II123.51e-3990180192
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   +kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e++kr++++l+e+n+rLekev+eLr +lk
  MLOC_54441.1  90 RKKLRLSKDQAAVLEECFKTHHTLTPKQKLALANSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYMKRWCEQLAEQNRRLEKEVAELR-ALK 180
                   69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1961147IPR009057Homeodomain-like
SuperFamilySSF466891.07E-1878147IPR009057Homeodomain-like
PROSITE profilePS5007116.77986146IPR001356Homeobox domain
SMARTSM003896.1E-1788150IPR001356Homeobox domain
PfamPF000466.4E-1790144IPR001356Homeobox domain
CDDcd000861.61E-1590147No hitNo description
PRINTSPR000313.5E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000313.5E-5126142IPR000047Helix-turn-helix motif
SMARTSM003407.4E-21146189IPR003106Leucine zipper, homeobox-associated
PfamPF021835.7E-10146180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAPQSLDLGL SLGLGLVSRS SQPSFWYSGG NAPVEPEVGP TPTAVAAVEE RRCSPGSPAS  60
SGSGSGLKRG AERSAGSGDE DQDDDGGNAR KKLRLSKDQA AVLEECFKTH HTLTPKQKLA  120
LANSLGLRPR QVEVWFQNRR ARTKLKQTEV DCEYMKRWCE QLAEQNRRLE KEVAELRALK  180
AAPPAHSAAA AAGPLTTLTM CLSCKRVAST SSASACTVPS FSANAAGSGM PMPSPVAVPD  240
HRQFFWGFRD TGAAYGGPAG LVKAVKAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54441.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669970.0AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170044.11e-127homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9313e-64HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE53e-64HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A3B6I0H21e-142A0A3B6I0H2_WHEAT; Uncharacterized protein
TrEMBLA0A446RHU21e-142A0A446RHU2_TRITD; Uncharacterized protein
STRINGMLOC_54441.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-44homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]