PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_54441.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HD-ZIP

Protein Properties

Length: 168aa MW: 18338.2 Da PI: 10.6135

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_54441.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36	1.2e-11	15	43	28	56
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++ LA++lgL rqV vWFqNrRa+ k MLOC_54441.2 15 KQKLALANSLGLRPRQVEVWFQNRRARTK 43 57778**********************98 PP
2	HD-ZIP_I/II	89.6	3.9e-29	14	79	26	92
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e++kr++++l+e+n+rLekev+eLr +lk MLOC_54441.2 14 QKQKLALANSLGLRPRQVEVWFQNRRARTKLKQTEVDCEYMKRWCEQLAEQNRRLEKEVAELR-ALK 79 489***********************************************************9.565 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	9.59E-8	14	46	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-10	15	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-10	15	54	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.017	15	45	IPR001356	Homeobox domain
Pfam	PF00046	4.1E-9	15	43	IPR001356	Homeobox domain
PRINTS	PR00031	1.7E-5	16	25	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	20	43	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-5	25	41	IPR000047	Helix-turn-helix motif
SMART	SM00340	7.4E-21	45	88	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.7E-10	45	79	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MTDKEMTWIS SRLQKQKLAL ANSLGLRPRQ VEVWFQNRRA RTKLKQTEVD CEYMKRWCEQ 60 LAEQNRRLEK EVAELRALKA APPAHSAAAA AGPLTTLTMC LSCKRVASTS SASACTVPSF 120 SANAAGSGMP MPSPVAVPDH RQFFWGFRDT GAAYGGPAGL VKAVKAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	45	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_54441.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366997	0.0	AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170044.1	7e-81	homeobox-leucine zipper protein HOX28-like
Swissprot	A2Y931	2e-42	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	2e-42	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	A0A446X0B8	1e-101	A0A446X0B8_TRITD; Uncharacterized protein
STRING	MLOC_54441.1	1e-108	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-31	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]