PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54674.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 231aa    MW: 23681.7 Da    PI: 8.5033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54674.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068142161120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++C+ Cgk+F++   L  H 
  MLOC_54674.1 142 HECNVCGKTFPTGQALGGHK 161
                   78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-1383108IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-1084106No hitNo description
SMARTSM003550.1884106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.24584106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-10137164No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4138164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.8E-14141166IPR007087Zinc finger, C2H2
SMARTSM003550.029142164IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305142164IPR007087Zinc finger, C2H2
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAVEAVLEAA ATVPSPPPRK EMAASSSSSS GEEASALLQQ AEGWSRRKRS RRQRALHPSE  60
EEYLALCLVM LAHGHRDGAP AAAHGCSVCG KVFASYQALG GHKASHRKPA GAEDRKPQAA  120
VAAASSSGSG DAEAGAGGGK VHECNVCGKT FPTGQALGGH KRCHYDGTIG SAAAGPTHKL  180
AAKASATPAS RGFDLNLPAL PDIPERCAVT EDGEEVLSPV SFKKPRLMLT A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54674.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082220.0EU408222.1 Triticum aestivum Q-type C2H2 zinc finger protein (ZFP22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150049.11e-107zinc finger protein 1-like
TrEMBLA0A3B6MLT21e-106A0A3B6MLT2_WHEAT; Uncharacterized protein
TrEMBLA0A453JV171e-106A0A453JV17_AEGTS; Uncharacterized protein
STRINGMLOC_54674.11e-165(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-37salt tolerance zinc finger