PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54694.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 88aa    MW: 9858.92 Da    PI: 7.5201
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54694.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-091862445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W++ E + + +a + +G g    W+++a+ mg ++++++++ ++q
     MLOC_54694.1 18 WSKKENKMFEEALAYYGEGapnLWEKVASAMGGTKSAEEVRRHFQ 62
                     ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8881065IPR017877Myb-like domain
SMARTSM007172.0E-61467IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-121672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-51871IPR009057Homeodomain-like
PfamPF002493.3E-81862IPR001005SANT/Myb domain
CDDcd001672.37E-51862No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSGSSSRST SPSSDSGWSK KENKMFEEAL AYYGEGAPNL WEKVASAMGG TKSAEEVRRH  60
FQILIDDVNN IEYGRIPFPK YKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1918851177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612032e-90AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176359.17e-48protein RADIALIS-like 3
SwissprotQ6NNN04e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLM0WU411e-58M0WU41_HORVV; Uncharacterized protein
STRINGMLOC_54694.12e-59(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-23RAD-like 1