PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_54810.7

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 123aa MW: 14666.9 Da PI: 7.7734

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_54810.7	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.7	4.2e-13	20	103	12	98
HTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ ++lp kfa+ +g ++++l+l+ ++ W + + ++ + +++l++GW++F++a++L+ g f+++++dg++ ++kvf+ MLOC_54810.7 20 SLKKMRLPDKFARLLDGR--RPRELKLREagRQRLLWVMDVVFDADG-HMYLGRGWEQFARAHDLRLGHFLILSYDGHTVL--TMKVFD 103 345589****888888..455677776326668899999777776.6679*********************986555..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.139	9	105	IPR003340	B3 DNA binding domain
CDD	cd10017	1.39E-15	10	103	No hit	No description
SuperFamily	SSF101936	2.16E-18	11	111	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	3.9E-10	12	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-15	12	107	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.2E-10	20	103	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF 60 DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTRRI 120 QDE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_54810.7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198708.1	7e-50	B3 domain-containing protein Os03g0619600-like
Swissprot	Q10Q26	3e-32	Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBL	A0A287MJP5	1e-82	A0A287MJP5_HORVV; Uncharacterized protein
STRING	MLOC_54810.2	6e-79	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	1e-12	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]