PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54829.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 453aa    MW: 49355.7 Da    PI: 5.3235
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54829.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31274328155
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   k rlrWt eLHerFveav++L G++kAtPk +l+lmkv+gLt++hvkSHLQkYR 
  MLOC_54829.1 274 KSRLRWTLELHERFVEAVNKLEGPDKATPKGVLKLMKVDGLTIYHVKSHLQKYRH 328
                   68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.269271331IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-30272329IPR009057Homeodomain-like
SuperFamilySSF466897.17E-17273328IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-24274328IPR006447Myb domain, plants
PfamPF002491.7E-8276327IPR001005SANT/Myb domain
PfamPF143792.5E-21363408IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSSHGVVAVK PIAAPEKTAH SYACGSTQSS VHKLLDAKLD HLGLLDDNLS STSQSSDIKT  60
ELIQSSSLGR SSLPFNLQRR SPEPDPESPL SHVSHPNFSE PMASNSSTFC TSLFSSSSTN  120
SAPCRQMGAL PFLPHPPKYE QQVLPGQSSN SSLQLSGDTG NVHDETEQPD DIKDFLNLSA  180
GDASDASFHG ENQAFAFAED EQMEFQFLSE QLGIAITDNE ESPQLDDIYD TPPPQMLSLP  240
VSSCSNQSLQ NPGSPGKLPL SSSRSSSGSA AANKSRLRWT LELHERFVEA VNKLEGPDKA  300
TPKGVLKLMK VDGLTIYHVK SHLQKYRHAK FIPEIKEEKK ASLDVKKVQP GSSGSDPFKN  360
KNLAEALRMQ LEVQKQLHEQ LEVQRQLQLR IEEHAKYLQR ILEEQQKAIA SSGSSLSLKT  420
PTEPSESTSK DGAEPEEATT SSPQPSKNSE TES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-24274331259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54829.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507950.0AK250795.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf91j11, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163203.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_020163204.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
SwissprotQ6YXZ41e-145PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLM0WUM80.0M0WUM8_HORVV; Uncharacterized protein
STRINGMLOC_54829.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.24e-61G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]