PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54886.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 181aa    MW: 19687.6 Da    PI: 9.8024
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54886.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.4e-204377135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  MLOC_54886.2 43 CADCNTTKTPLWRGGPNGPKSLCNACGIRYRKRRR 77
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-173789IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.9273773IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-133877No hitNo description
Gene3DG3DSA:3.30.50.103.1E-164177IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-164292No hitNo description
PfamPF003202.3E-184377IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSPAEMGSDK MKMKMKMIEV EVQAAAADPD DCTASGAGDP KSCADCNTTK TPLWRGGPNG  60
PKSLCNACGI RYRKRRRVAM GLDPEAKRKP KRDDAINSAA AAAEASTQQQ EEVTKPTDDD  120
KAVSTNKTTK THTVELHMVG FGKDAVLKQR RRMRRRKPSC LGEEERAAML LMALSSGVIY  180
A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
27377KRRRV
3148154QRRRMRR
4149156RRRMRRRK
5150155RRMRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54886.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641260.0AK364126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021P18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158673.12e-64GATA transcription factor 15-like
TrEMBLF2DJQ81e-130F2DJQ8_HORVV; Predicted protein
STRINGMLOC_54886.31e-131(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.16e-24GATA transcription factor 17