PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54895.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 205aa    MW: 22042.9 Da    PI: 7.0419
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54895.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY292.1e-09188205219
                   --SS-EEEEEEE--TT-S CS
          WRKY   2 dDgynWrKYGqKevkgse 19 
                   +Dgy+WrKYGqK vk+s+
  MLOC_54895.1 188 EDGYRWRKYGQKAVKNSP 205
                   8**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-10174205IPR003657WRKY domain
SuperFamilySSF1182902.09E-7180205IPR003657WRKY domain
PROSITE profilePS5081112.013182205IPR003657WRKY domain
PfamPF031061.9E-5188205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSGGGGGGD QGRHGVYHQH GHGQLTRNDG AGGYEFSNDD MESFFFNQPE GVVGGVRADE  60
IEPYSSLTSY LQGFLDPTGL ARHLDVPAKH ELSVDVRTHD QDSQGTGSAA GESAPLLTPN  120
SSVSFSSGGG DGEGKSHRSK KGRAQEADNQ EDGESSKKAN NKPKKKAEKR PRLPRVSFLT  180
KSEVDHLEDG YRWRKYGQKA VKNSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192765.11e-107probable WRKY transcription factor 71
TrEMBLA0A3B6EIG51e-108A0A3B6EIG5_WHEAT; Uncharacterized protein
TrEMBLA0A446NIM71e-108A0A446NIM7_TRITD; Uncharacterized protein
TrEMBLA0A453F3291e-108A0A453F329_AEGTS; Uncharacterized protein
TrEMBLM8AKQ31e-108M8AKQ3_TRIUA; Putative WRKY transcription factor 71
STRINGMLOC_54895.11e-148(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-16WRKY DNA-binding protein 28