PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54900.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 506aa    MW: 54863.2 Da    PI: 5.4575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54900.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07120147225
                   -S---SGGGGTS....--TTTTT-SS-S CS
       zf-CCCH   2 ktelCrffartG....tCkyGdrCkFaH 25 
                   kt+lC+ff+r G     C++G+ C++aH
  MLOC_54900.2 120 KTSLCSFFRRRGggpdGCNHGEACRYAH 147
                   9*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-11114155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.55E-5116154IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4118149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953118150IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5120147IPR000571Zinc finger, CCCH-type
CDDcd005908.01E-5204269No hitNo description
Gene3DG3DSA:3.30.70.3302.2E-6207278IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.28E-5207281IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF533352.82E-9324350IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.82E-9382477IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MKTGSPPKPF PQPSPVPAAM EGTTTPPPQE QQAPELTGEK RKREEGSPAA PAGENPAMED  60
TTQPPQQQEE AQPAGEKRKR EEDEAPEASA GDAAPASAPA GEEATAAAPT GEGARHPMSK  120
TSLCSFFRRR GGGPDGCNHG EACRYAHTEE ELRPRPDGTW DPTSDRAKKL RRVSEEDGEA  180
VEDEKRGRWG QEEVTIDDSS LDKCLVGLSR HWLTDRLKSF LDEQGISYAV AKKKKGMTVG  240
FVTFETVEQL KNAVEVLKEN RSGGKQIKIA DANRRSHQKL HSEGPVSNNG AATENSSDAA  300
APDEGTPGPE AGGGTKRTVR DAVTPLAHMT YSDQLEHKKS SVAQLLKKLT RNAKKACPAD  360
VTLPDWISNA KQIGGLSCKL EGILESPVID GYRNKCEFSV GHSLAGKKTV GFMLGNFREG  420
VTAVEEPVDC PNVSALSCKY AMMFQDFLQL SCLPAWNRVD NSGFWRQFTV REGRSPAQAV  480
VAQDTQTQIS EVMIIIQVVW TDNEMC
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174158.10.0zinc finger CCCH domain-containing protein 24
TrEMBLM0WUY30.0M0WUY3_HORVV; Uncharacterized protein
STRINGMLOC_54900.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.21e-117C3H family protein