PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54950.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 231aa    MW: 25347.3 Da    PI: 7.1792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54950.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054e-33152210159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+ +v++tYeg Hnh+
  MLOC_54950.1 152 LDDGYRWRKYGQKAVKNSSNPRSYYRCTHPTCNVKKQVQRLAKDTAIVVTTYEGVHNHP 210
                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-34138210IPR003657WRKY domain
SuperFamilySSF1182909.94E-29144211IPR003657WRKY domain
PROSITE profilePS5081128.966147212IPR003657WRKY domain
SMARTSM007741.4E-38152211IPR003657WRKY domain
PfamPF031066.5E-26153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDDLHGDDEA HTFPRFPYFS APSASPPLAS PLASSSNDQH HSPLAAALQQ LTPPPWPCSP  60
PDLTPQPMLP AMVELDWSSM FQMGPVAPPE QKEEQAAQAD RTQGGENDGE AGGSGSGGKD  120
REKAEGSAGR SGKKKVSKPR FAFQTRSEND ILDDGYRWRK YGQKAVKNSS NPRSYYRCTH  180
PTCNVKKQVQ RLAKDTAIVV TTYEGVHNHP CEKLMEALGP ILKQLQFLSQ F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26126209174Probable WRKY transcription factor 4
2lex_A4e-26126209174Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-142HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179077.11e-129probable WRKY transcription factor 56
TrEMBLM0WVB21e-172M0WVB2_HORVV; Uncharacterized protein
STRINGMLOC_54950.11e-173(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.19e-55WRKY DNA-binding protein 24