PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55094.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 88aa    MW: 9838.05 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55094.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-0815541554
                  HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  +iN+ +++L++llP++ + +s   s    L++++ YIksL
  MLOC_55094.1 15 EINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSL 54
                  7**************77899999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.112154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-101471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-101476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-61554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSRRSSRGA ISDEEINELI SKLQSLLPNS RRRGSSQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSDLMS TMDHNSAGAE IIRSILRS
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3756311e-145AK375631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3099P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172556.11e-52transcription factor ILI5
SwissprotA2X9L88e-46ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX08e-46ILI5_ORYSJ; Transcription factor ILI5
TrEMBLF2EHK49e-54F2EHK4_HORVV; Predicted protein
STRINGMLOC_55094.12e-54(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.19e-19bHLH family protein