PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_55239.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

LBD

Protein Properties

Length: 230aa MW: 23615.8 Da PI: 7.2341

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_55239.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.4	1.6e-40	35	135	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael + MLOC_55239.1 35 PCGACKFLRRKCVSECIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTY 131 7*********************9989*****************************************************************99 PP DUF260 97 lkee 100 l+++ MLOC_55239.1 132 LQTH 135 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.084	34	136	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-39	35	133	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSSGVGSSTL GGCGGPSGSG SGGGGGGLGG GGGGPCGACK FLRRKCVSEC IFAPYFDSEQ 60 GAAHFAAVHK VFGASNVSKL LLQIPAHKRL DAVVTICYEA QARLRDPVYG CVAHIFALQQ 120 QVVNLQAELT YLQTHLATLE LPSPPLPAAP QLPMAMPAQF SISDLPSTTN IPTTIDLSAL 180 FEPPAQPQWA LQQHHQHQLR QPSYGAMAHR GGSSMAEGSA GSGSGDLPAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-38	31	136	7	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-38	31	136	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_55239.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094077	0.0	FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160420.1	1e-109	LOB domain-containing protein 30
Swissprot	O81323	2e-67	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A287PBQ6	1e-162	A0A287PBQ6_HORVV; Uncharacterized protein
STRING	MLOC_55239.1	1e-165	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	1e-61	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]