PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55252.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 251aa    MW: 26829.8 Da    PI: 10.3159
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55252.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.4e-05158181123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+ Cg++ s + +L+ H+ + H
  MLOC_55252.2 158 FPCKVCGEVLSKPQQLELHQAMkH 181
                   89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037158186IPR007087Zinc finger, C2H2
PROSITE patternPS000280160181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAGGARCSAL LRGFLSLFFV MFLHIGHAGC CFSPAVSSST GVEERAGARR RGRHVSSLAT  60
SLRCYIHRIF SSAGPRNAVP GGEEEEEAVT TTVSSSPLAQ SVTRRQTSVL LSTPSSPCAS  120
PFLSPMSPQS LSVTPLVPCS PLATRQLSRS FAARGDLFPC KVCGEVLSKP QQLELHQAMK  180
HSLSELTHLD SSMNIIRMIF LAGWGLPASG AGAGAGDPPA VGRILRIHHN PRALSRFEEY  240
RDLVRARPAR P
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55252.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368849e-83BT036884.1 Zea mays full-length cDNA clone ZM_BFb0145P22 mRNA, complete cds.
GenBankBT0664359e-83BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845429e-83BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546119e-83EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153470.11e-141uncharacterized protein LOC109738783
TrEMBLA0A287PB961e-167A0A287PB96_HORVV; Uncharacterized protein
STRINGMLOC_55252.11e-173(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-17C2H2 family protein