PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55323.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 143aa    MW: 15181.9 Da    PI: 4.3885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55323.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-099362855
           AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++r++lg+f tae+Aa+a+++a++ + g
  MLOC_55323.2  9 KTRIWLGTFETAEDAARAYDEAARIMCG 36
                  48*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.049144IPR001471AP2/ERF domain
CDDcd000181.40E-17646No hitNo description
SMARTSM003808.9E-10650IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-19845IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-12845IPR016177DNA-binding domain
PfamPF008477.2E-5935IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAVFFPCSKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR TNFPDNDAAP SSSFLSPALV  60
AKLHRFNVAC GPQAAQQGDK GASASSVGVE PRTSPTPFAG YTGNGASAPS AAAGWSGGFL  120
EEQYVEQMIE ELLDSNFSME ISY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55323.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749421e-49EU974942.1 Zea mays clone 461426 ethylene response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185052.14e-74ethylene-responsive transcription factor ERF003-like
RefseqXP_020191629.14e-74ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW59e-28ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0WWU61e-94M0WWU6_HORVV; Uncharacterized protein
STRINGMLOC_55323.12e-95(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-12ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]