PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55345.10
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 955aa    MW: 105332 Da    PI: 6.1239
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55345.10genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23148249199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++ 
  MLOC_55345.10 148 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEKS 240
                    89*********************999*****9555555.49************************************************..45777 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+v+v+r+
  MLOC_55345.10 241 QLLVGVRRA 249
                    78*****97 PP
2Auxin_resp107.21.8e-35274356183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaas++s F+++YnPr+s+s Fvv++ +++ka++++ svGmR+ m+ ete+s +rr +Gt+vgvsd+dp+rWpnSkWr+L+
  MLOC_55345.10 274 AAHAASSGSSFTIYYNPRTSPSPFVVPMTRYNKAIYIQQSVGMRIAMMSETEESGKRRHTGTIVGVSDSDPMRWPNSKWRNLQ 356
                    79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.45E-44139277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-40141262IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-21147248No hitNo description
PfamPF023623.5E-21148249IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83148250IPR003340B3 DNA binding domain
SMARTSM010197.1E-23148250IPR003340B3 DNA binding domain
PfamPF065079.3E-32274356IPR010525Auxin response factor
PfamPF023093.5E-10810938IPR033389AUX/IAA domain
PROSITE profilePS5174525.301851935IPR000270PB1 domain
SuperFamilySSF542778.34E-9869930No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG  60
SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL  120
QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS  180
MQPPNQELIV RDLHDNMWTF RHIYRGQPKR HLLTTGWSLF VGAKRLKAGD SVLFIRDEKS  240
QLLVGVRRAT NQQTALSSSV LSTDSMHIGV LAAAAHAASS GSSFTIYYNP RTSPSPFVVP  300
MTRYNKAIYI QQSVGMRIAM MSETEESGKR RHTGTIVGVS DSDPMRWPNS KWRNLQVEWD  360
EHEHGYGERP ERVSIWDIET PENTIVLPSA SLNSKRQCLP GYGVPGLEVA SANMSPFQRA  420
PGNPYGNLQH MPAVGSELAM MMFLNQSGQN IGTPLSCHQS SYSSIIQNVK QNYMPPSTYG  480
HPIGSIKPES MPSNEAQQQQ LHAPKMQRGD SESCEVQPAT DSVSASELHA AGREPRNTDK  540
YPTQSISEQN CKGEPRVKPR RSKKGSSRKT ISENSELSSA PSRVCDDQQN VLEAKLVGCG  600
TEQVNCGNNE GSSAALTHGD FAGQLQCQQV EQNELVSPPK LESSISPDGG KSVNSFPNQA  660
SFSQFFDGLD WMVQPPYYQD SNGMQSISAS ENIFSPSANM ASTINTDTLE TFQNSCLSDC  720
FPNSIQDFIG SPDLHSLTFL SPEMQNLDVH NDGSNVPSTS NSYVQMSFSE DDSGNHMESI  780
QRGMNNTSCS QPQATEGFNL GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSID  840
RSAKPLKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK  900
LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.02238131390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55345.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160868.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0WX000.0M0WX00_HORVV; Auxin response factor
STRINGMLOC_55345.60.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]