PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55345.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 954aa    MW: 105275 Da    PI: 6.1239
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55345.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.1e-22148248199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++i  ++++r++lt+GW+ Fv a++Lk+gD+v+F   ++++ +
  MLOC_55345.8 148 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNMWTFRHI-YRQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--RDEKSQ 240
                   89*********************999*****9555555.49***************7.5667799************************..457777 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+v+v+r+
  MLOC_55345.8 241 LLVGVRRA 248
                   8*****97 PP
2Auxin_resp107.21.8e-35273355183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaas++s F+++YnPr+s+s Fvv++ +++ka++++ svGmR+ m+ ete+s +rr +Gt+vgvsd+dp+rWpnSkWr+L+
  MLOC_55345.8 273 AAHAASSGSSFTIYYNPRTSPSPFVVPMTRYNKAIYIQQSVGMRIAMMSETEESGKRRHTGTIVGVSDSDPMRWPNSKWRNLQ 355
                   79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-41139276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-38141261IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-19147247No hitNo description
PfamPF023621.6E-19148248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901148249IPR003340B3 DNA binding domain
SMARTSM010191.0E-20148249IPR003340B3 DNA binding domain
PfamPF065079.3E-32273355IPR010525Auxin response factor
PfamPF023093.5E-10809937IPR033389AUX/IAA domain
PROSITE profilePS5174525.301850934IPR000270PB1 domain
SuperFamilySSF542778.34E-9868929No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 954 aa     Download sequence    Send to blast
MAASQSQEKQ HLPAFGVLRN AAALLDEMQL MGEAQGAKKV INSELWHACA GPLVCLPQRG  60
SLVYYFPQGH SEQVAATTKK TPNSRIPNYP SLPSQLLCQV HNITMHADKD TDEVYAQMTL  120
QPVNSETDVF PIQSLGSYAK SKHPAEYFCK NLTASDTSTH GGFSVPRRAA EKLFPQLDYS  180
MQPPNQELIV RDLHDNMWTF RHIYRQPKRH LLTTGWSLFV GAKRLKAGDS VLFIRDEKSQ  240
LLVGVRRATN QQTALSSSVL STDSMHIGVL AAAAHAASSG SSFTIYYNPR TSPSPFVVPM  300
TRYNKAIYIQ QSVGMRIAMM SETEESGKRR HTGTIVGVSD SDPMRWPNSK WRNLQVEWDE  360
HEHGYGERPE RVSIWDIETP ENTIVLPSAS LNSKRQCLPG YGVPGLEVAS ANMSPFQRAP  420
GNPYGNLQHM PAVGSELAMM MFLNQSGQNI GTPLSCHQSS YSSIIQNVKQ NYMPPSTYGH  480
PIGSIKPESM PSNEAQQQQL HAPKMQRGDS ESCEVQPATD SVSASELHAA GREPRNTDKY  540
PTQSISEQNC KGEPRVKPRR SKKGSSRKTI SENSELSSAP SRVCDDQQNV LEAKLVGCGT  600
EQVNCGNNEG SSAALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS  660
FSQFFDGLDW MVQPPYYQDS NGMQSISASE NIFSPSANMA STINTDTLET FQNSCLSDCF  720
PNSIQDFIGS PDLHSLTFLS PEMQNLDVHN DGSNVPSTSN SYVQMSFSED DSGNHMESIQ  780
RGMNNTSCSQ PQATEGFNLG MYSKLPSLKE SQVLSLPEIH NSSRGTSSCS MDAAEYSIDR  840
SAKPLKPPVR TYTKVQKLGS VGRSIDVTRY RDYRELRSAI ASMFGLQGKL EHPASSDWKL  900
VYVDYENDVL LVGDDPWEEF INCVRCIRIL SPSEVQQMSE NGMQVLNDCI QADQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.02238031390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55345.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699300.0AK369930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160869.10.0auxin response factor 11 isoform X2
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0WX010.0M0WX01_HORVV; Auxin response factor
STRINGMLOC_55345.60.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]