PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55677.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 288aa    MW: 30620.9 Da    PI: 7.098
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55677.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-1277125356
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                   ++GV++ + +g + A+Ir+      + ++ +lg+f  aeeAa+a+++a+ +l+g+
  MLOC_55677.1  77 FRGVSRTH-TGTYGARIRHS-----KgQTRWLGTFKAAEEAARAYDEAAVRLHGA 125
                   8****777.9*********4.....34999***********************95 PP
2AP232.32.5e-10160208355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   + GV++ + +g++vA ++d    g+++ + +g+f+taeeAa a++aa+ + +g
  MLOC_55677.1 160 FVGVSRQP-NGKYVAGLWDS---GRKQMVKVGRFDTAEEAAGAYDAAAVRVYG 208
                   78***999.8******9992...34599*******************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-1976138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-1976132IPR001471AP2/ERF domain
PROSITE profilePS5103216.13376132IPR001471AP2/ERF domain
PfamPF008471.7E-477124IPR001471AP2/ERF domain
CDDcd000181.53E-1877131No hitNo description
SuperFamilySSF541716.54E-1477132IPR016177DNA-binding domain
SMARTSM003801.7E-14159222IPR001471AP2/ERF domain
PROSITE profilePS5103214.236159216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-17159216IPR001471AP2/ERF domain
PfamPF008473.0E-6160206IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-13160216IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMVATAESVH DQGLKLQGGV DVVAVEHDGA AEAAGGRRKR AQAGSKGSTS EGAGRAYGAG  60
KAAKKRAAPR PESWTEFRGV SRTHTGTYGA RIRHSKGQTR WLGTFKAAEE AARAYDEAAV  120
RLHGARAVTN YKQNGVSEPV GRAAAKKKPA APRPDARTEF VGVSRQPNGK YVAGLWDSGR  180
KQMVKVGRFD TAEEAAGAYD AAAVRVYGAA ARTNFERKPT AVATDDGDES SVDLLSDLPE  240
LPAGDARSDS IMPGPTLDDL KTDADPTQAE WQQVDEFLID MDFTDMVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167881.11e-129AP2-like ethylene-responsive transcription factor TOE3
TrEMBLA0A287E2160.0A0A287E216_HORVV; Uncharacterized protein
STRINGMLOC_55677.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2916834