PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5568.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 212aa    MW: 23891.6 Da    PI: 7.215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5568.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-171259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv ++ q+G g+W+  ar  g++R +k+c++rw++yl
      MLOC_5568.1 12 KGPWTLEEDLILVGYISQHGEGSWDNLARSAGLNRNGKSCRLRWLNYL 59
                     79********************************************97 PP
2Myb_DNA-binding50.54.7e-1665108146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eEd  + +++ +lG++ W+ Ia++++ gRt++++k++w++
      MLOC_5568.1  65 RGSISPEEDMVIRELHSRLGNK-WSEIAKHLP-GRTDNEVKNYWRT 108
                      7888******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.13759IPR017930Myb domain
SuperFamilySSF466897.11E-3110106IPR009057Homeodomain-like
SMARTSM007178.7E-131161IPR001005SANT/Myb domain
PfamPF002499.9E-151259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201365IPR009057Homeodomain-like
CDDcd001671.02E-91459No hitNo description
PROSITE profilePS5129424.8360114IPR017930Myb domain
SMARTSM007179.9E-1564112IPR001005SANT/Myb domain
PfamPF002491.3E-1465108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2466113IPR009057Homeodomain-like
CDDcd001673.84E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MARMMGEPAV RKGPWTLEED LILVGYISQH GEGSWDNLAR SAGLNRNGKS CRLRWLNYLR  60
PGLRRGSISP EEDMVIRELH SRLGNKWSEI AKHLPGRTDN EVKNYWRTRV HKKAPHQNQL  120
RAQPCLATSE ATSSASASAS TSHASSTVGD EYTQTSFPYP ELSWVAAGHR EMVDVGASAT  180
RFFPSEFGDN FWNVQDNFWE TLPLSDPVYE AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-28811423128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5568.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755160.0AK375516.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3096J04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161957.11e-133myb-related protein 340-like
TrEMBLF2EH891e-157F2EH89_HORVV; Predicted protein (Fragment)
STRINGMLOC_5568.11e-158(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.18e-58myb domain protein 21