PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55748.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 390aa    MW: 41523.8 Da    PI: 9.5496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55748.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.2e-1293137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE++ ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
     MLOC_55748.1  93 SWSEEEHKNFLLGLNKLGKGDWRGISRNYVVSRTPTQVASHAQKY 137
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.100.0012039IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.5482136IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.94285142IPR017930Myb domain
SuperFamilySSF466892.03E-1587143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1789141IPR006447Myb domain, plants
SMARTSM007172.2E-990140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-992136IPR009057Homeodomain-like
CDDcd001672.65E-893138No hitNo description
PfamPF002493.6E-1093137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTRDGVPPAA PAGGGAGDGP RRCGQCGHHG HNARTCTARP VKLFGVRIGD KPIRKSVSMG  60
NLAQLAEGSG GARAEGYGSE GDDDKPHRKR GESWSEEEHK NFLLGLNKLG KGDWRGISRN  120
YVVSRTPTQV ASHAQKYFIR QTNVNRRKRR SSLFDMVIED PGDQSLSRSS SQEMPLSRSS  180
SQDVEELVDD LRPVTAPVTP PAPMPVITSV SVRPPMPGMA PPAPVPMLTY ASAPSPVLAM  240
THQPQGNESV GSSSTAGEAG MVMPQVMPSY AYPPMMIPAP HYVQAVFPFP YYSYAPVFYG  300
PPVSMQASSS GTVQVSHEPV RPVAVHSVPP VNVEDLYNMS QLNLKGDSSS NGVAPNLPLP  360
PNPNGRPERQ SAFHGKGPGN GSSNGPIPTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581400.0AK358140.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170412.10.0transcription factor MYB1R1-like
TrEMBLF2D2N30.0F2D2N3_HORVV; Predicted protein
STRINGMLOC_55748.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-47MYB_related family protein