PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55909.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 793aa    MW: 90378 Da    PI: 7.3837
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55909.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029674697122
                   EEET..TTTEEESSHHHHHHHHHH CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                   ++C    C++sFs++ +L  H r 
  MLOC_55909.1 674 FPCDieGCDMSFSSQQDLLLHKRD 697
                   789999***************985 PP
2zf-C2H211.30.0011757783123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                   y+C    Cg++F+  s++ rH r+  H
  MLOC_55909.1 757 YECMvpGCGQTFRFVSDFSRHKRKtgH 783
                   788888****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.4674696IPR015880Zinc finger, C2H2-like
SMARTSM0035515697721IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97697726IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-5698730No hitNo description
Gene3DG3DSA:3.30.160.603.9E-4699725IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280699721IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-10726751IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016727751IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.406727756IPR007087Zinc finger, C2H2
PROSITE patternPS000280729751IPR007087Zinc finger, C2H2
SuperFamilySSF576677.9E-11737780No hitNo description
Gene3DG3DSA:3.30.160.601.7E-10752780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.24757783IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136757788IPR007087Zinc finger, C2H2
PROSITE patternPS000280759783IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MHLYEECCEA KTTTSLMKPI EDNSTTITRC GRDTDTNHLA KLREQGTSYD QCSVYVDLAN  60
DPTISGVKSY SDTHLTTAKS SIEPDVLTQL KYNKDSCRMH VFCLEHALGT WTQLQKIGGA  120
NVMLLCHPEY PRAESTAKFI AEELGLKPDW KDVDFEEATD DDIRRIQLAL HDEDAEPASS  180
DWAVKMGINI YYSAKQSKSP LYSKQIPYNS IIYDVFGQEN PDNLTDYGRQ RSGVTKKRVA  240
GCWCGKVWMS NQVHPFLVRE HEEHNHAIVC SKVMLGANYH AKVHDEPSLT CNTIVICSPS  300
ERISRRKGGD SIEKSGARKK RCSANDEATL PCSSLGTNPK TINDQPRNFD DHDKHEGGKI  360
AEAPSTQQYQ HLQSMNMKSS SNKPKDDKGK CNFLDLYDED NGVDCWFNID SGDNAAIRNL  420
EDSRQKELDT VKVKSPGKLQ GNMRKSSKCK VRDDSLNGDK KVQKVNKKSI SRKQKDVDIN  480
TQFREEYKED NNWDEVPEGK DHDVEVESRP KTRSGEDDKR NNYSHELRYE DNDMDCWHDR  540
HGGENATMGN LDNSPVQRLE AAEVKSGGKL HCCKRKSSKG KAKDDYSNGD EKLQMLNIES  600
ISRKQKSDNQ FDEGCDRDNA LDSLLNDVDE ATRENCYEVR EEEMDGMEVK PRGKVQTGKR  660
KTSRCQAGDK AAKFPCDIEG CDMSFSSQQD LLLHKRDICP VKGCKKKFFC HKYLLQHRKV  720
HMDERPLNCE WKGCKKTFKW PWARTEHMRV HTGVRPYECM VPGCGQTFRF VSDFSRHKRK  780
TGHSSGKKNK EST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-5767179120140Lysine-specific demethylase REF6
6a58_A3e-5767179120140Lysine-specific demethylase REF6
6a59_A3e-5767179120140Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304320RRKGGDSIEKSGARKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201011.10.0lysine-specific demethylase JMJ705-like
TrEMBLA0A446SUX10.0A0A446SUX1_TRITD; Uncharacterized protein
STRINGMLOC_55909.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-55relative of early flowering 6