PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55957.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 179aa    MW: 19818.1 Da    PI: 10.334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55957.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.37.7e-20219653128
           NAM  53 aeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +e ++ yfFs r+ +++ +g r++ra +sgyWkatgk+k+v+++    k+ lvg+k+ L+f++g++    +tdWvmheyrl
  MLOC_55957.1  21 SEGESAYFFSLRQAASSgRGGRRRRA-ASGYWKATGKEKPVFVQlpvgKRLLVGVKTALAFHRGKS----RTDWVMHEYRL 96 
                   455678*****999887346666665.78**************999977778**********6544....79*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3941124IPR003441NAC domain
SuperFamilySSF1019415.23E-2415124IPR003441NAC domain
PfamPF023652.2E-122596IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEVELVGLIS FRFELIAAGA SEGESAYFFS LRQAASSGRG GRRRRAASGY WKATGKEKPV  60
FVQLPVGKRL LVGVKTALAF HRGKSRTDWV MHEYRLAGAA EQNKRANDDS PQSSEWVVCR  120
VSLKSRARRA AAGRETTADH HQQPSPSSTS SCVTDHACHA PDQEEVSSQQ QQEQQHPRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-152712572169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55957.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568990.0AK356899.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168455.11e-71NAC domain-containing protein 41-like
TrEMBLM0X0011e-128M0X001_HORVV; Uncharacterized protein
STRINGMLOC_55957.21e-114(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-16Arabidopsis NAC domain containing protein 87