PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5597.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 167aa    MW: 18404.8 Da    PI: 9.4294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5597.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.4e-113478147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT  E++++++a  ++  + W++I + +g  +t  q++s+ qky
      MLOC_5597.3 34 RESWTDPEHDKFIEALLLFDRD-WRKIEAFVG-SKTVIQIRSHAQKY 78
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-152884IPR009057Homeodomain-like
PROSITE profilePS5129413.3422983IPR017930Myb domain
TIGRFAMsTIGR015576.4E-173281IPR006447Myb domain, plants
SMARTSM007172.2E-83381IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-53374IPR009057Homeodomain-like
PfamPF002497.8E-93478IPR001005SANT/Myb domain
CDDcd001675.57E-73679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAAVMESAVS GGGGGEGAEA AGRVRKPYTI TKSRESWTDP EHDKFIEALL LFDRDWRKIE  60
AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH LPPPRPKRKA AHPYPHNKAS KKAPEVDLPQ  120
QPPHIVEQGC VVPMDAPTVA TNSSADDTFP SWDNVLTQPY SPRHTQG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5597.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582840.0AK358284.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199314.11e-103protein REVEILLE 6-like isoform X3
SwissprotQ8H0W36e-51RVE6_ARATH; Protein REVEILLE 6
TrEMBLF2D3271e-118F2D327_HORVV; Predicted protein
STRINGMLOC_5597.81e-120(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-41MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]