PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5597.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 258aa    MW: 28316.7 Da    PI: 5.5388
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5597.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.2e-113478147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT  E++++++a  ++  + W++I + +g  +t  q++s+ qky
      MLOC_5597.6 34 RESWTDPEHDKFIEALLLFDRD-WRKIEAFVG-SKTVIQIRSHAQKY 78
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.13E-152884IPR009057Homeodomain-like
PROSITE profilePS5129413.3422983IPR017930Myb domain
TIGRFAMsTIGR015571.4E-163281IPR006447Myb domain, plants
SMARTSM007172.2E-83381IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-53374IPR009057Homeodomain-like
PfamPF002491.7E-83478IPR001005SANT/Myb domain
CDDcd001672.18E-63679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAAVMESAVS GGGGGEGAEA AGRVRKPYTI TKSRESWTDP EHDKFIEALL LFDRDWRKIE  60
AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH LPPPRPKRKA AHPYPHNKAS KKAPEVDLPQ  120
QPPHIVEQGC VVPMDAPTVA TNSSADDTFP SWDNVLTQPY SPRHTQDLGA ANNSSSSIEC  180
QSGTWPTSDA IEQEAWLTSD ATEQEIILPA LHAMPDFAQV YNFLGGVFDP DTTGHLQKLR  240
EMDPIDAETV CHLLISPL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5597.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582840.0AK358284.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199314.11e-167protein REVEILLE 6-like isoform X3
SwissprotQ8RWU34e-73RVE8_ARATH; Protein REVEILLE 8
TrEMBLF2D3270.0F2D327_HORVV; Predicted protein
STRINGMLOC_5597.80.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-60MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Fogelmark K,Troein C
    Rethinking transcriptional activation in the Arabidopsis circadian clock.
    PLoS Comput. Biol., 2014. 10(7): p. e1003705
    [PMID:25033214]
  4. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  5. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]