PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56050.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 1237aa    MW: 137435 Da    PI: 4.6416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56050.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08657679527
                   --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   +C+ ++  GtC yG++C+F+H+p
  MLOC_56050.6 657 NCPSYMSKGTCTYGPSCHFNHPP 679
                   7********************96 PP
2zf-CCCH35.22.1e-11716738426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C++++rtG C+yG +C+F+H+
  MLOC_56050.6 716 RNCDYYMRTGACRYGKNCHFNHP 738
                   79********************9 PP
3zf-CCCH23.21.2e-07909935127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ +C+f ar+G Ck+ + Ck++H++
  MLOC_56050.6 909 PGRQECPFLARYGDCKFASACKYHHPK 935
                   57899********************96 PP
4zf-CCCH28.82.2e-09949975127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++ C+f++r+G Ck+ + C+++H++
  MLOC_56050.6 949 PGRPDCPFYMRFGDCKFASACNYHHPK 975
                   689**********************96 PP
5zf-CCCH36.58e-129841009227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                     +++C+f+++ G+Ck+G++CkF H++
  MLOC_56050.6  984 EEPECPFYMKRGFCKFGAQCKFYHPE 1009
                    5799********************96 PP
6zf-CCCH21.25e-0710801106127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                    ++++ Cr+++++G Cky + C F+H++
  MLOC_56050.6 1080 PGQPDCRYYMQFGKCKYLSACIFHHPK 1106
                    5789*********************96 PP
7zf-CCCH26.98.5e-0911311155327
                    S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                    ++ C+f++++G C++G+ C F H++
  MLOC_56050.6 1131 MPDCPFYMKSGKCQFGSLCEFRHPK 1155
                    789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.666652680IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4652679IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-5652679IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7657679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5658677IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601712740IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6712739IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6715740IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9716738IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4718738IPR000571Zinc finger, CCCH-type
SMARTSM003560.32908935IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784908936IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4910935IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483948976IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028948975IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6949975IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8929821010IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-79821009IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-99841009IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-59861010IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-49881009IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.51610791107IPR000571Zinc finger, CCCH-type
SMARTSM003560.006610791106IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-410811106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.48811281156IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-411281155IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-611311155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.63411961224IPR000571Zinc finger, CCCH-type
SMARTSM003560.0711961223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-511991226IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1237 aa     Download sequence    Send to blast
MDDRHPHPHR DTSLVHHHHL KVADAPIHDD DHHLKVADAP IHDDDHHLKL LDATAPPTPR  60
DHAIAAAAAH QQQELPTHGL PTGSTRDNRA VQPQEVQLEQ GVVALAGVGL ATQDDTAVDR  120
DATIHDHNYA IAVDAHHQEQ VKPLLEQCTS TSTSCEDLGT PAMDNDDDAV QLQEVMEQQH  180
ATHPRDEYIA AEEQSEMLDR ELGSTEKADA VPVQEAAEQG LVGTDGESAD ATAVDGHDMA  240
VEQCVTCHDL GTTTENDGAK DDQEQGVIDQ GDAAIDGDND VKHHKVLVPG AVEGTHTSSD  300
DIAVEDQGKN VEQCTTYDVL GTTMKNDDAI AVDDQQVVEQ GVVDLTTIDD DPSVEEQEVV  360
EQGVVDLTTM DDDPSVEEQE VVEQGVVDLT TMDDDPSVED HEVLQQGIIG GTVDIAVQKQ  420
EKPLEQCSRA TKDEYTAKEK EMVVEQGVID PKYMDIAMED QDKLLIIDDQ DTVPMDDIVV  480
KDHDKAVVEY ASDAIVSIKD ESPVEEHDTV GSQGVIDKNG RTKDDIDVEG HGYVKELVII  540
DKWGTSSDAA ALEGQKNETE PCIGDEQIAG KDMDGVHAEA NMLEQMTGDK QGATLSDFAV  600
DKHKDVVERV RHEWGAPEND LAMDTAAYQG TRDWGIVNKE KYRAPARRYP QKPRKLNCPS  660
YMSKGTCTYG PSCHFNHPPF NAKTNDSWRP SERRDHGAAE ILELNRLGLP IREGARNCDY  720
YMRTGACRYG KNCHFNHPDH VIDARFSSPT GWEDNALETE KSSDHALTEA SHMKKASDDA  780
TLNDRSHLKK SSDGATLDDR SHLNKSSDNA TLDDRSHLKR SSDGATVDDT SYSKKSSDHD  840
TSSTSGVLPP SIFRMLLPPQ KVLPSTEGKA KKKSDWSSAS DDSDGCCSAD SSDGPLCKQE  900
EHVDYPERPG RQECPFLARY GDCKFASACK YHHPKQSKDK EQVNYPERPG RPDCPFYMRF  960
GDCKFASACN YHHPKDKYPT GLPEEPECPF YMKRGFCKFG AQCKFYHPED ANPTMQSPTD  1020
AKISVTMDKH HPSTRITPED HVPQQPQYPE RRSVTTDDHH PSIRITPEVL PQQPQYPERP  1080
GQPDCRYYMQ FGKCKYLSAC IFHHPKDRLA AMWSPSDPAH SDQIGPKIHG MPDCPFYMKS  1140
GKCQFGSLCE FRHPKDIYST TEEAFGERTG SGAYDSLTRS DNGVEQQEGS VMYPERPGEP  1200
ECAHYMRQGY CKFQMNCKYH HPGDRLSKKP YYDSTCY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56050.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692020.0AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.10.0uncharacterized protein LOC109766829
TrEMBLA0A287GUC00.0A0A287GUC0_HORVV; Uncharacterized protein
TrEMBLA0A287GUD50.0A0A287GUD5_HORVV; Uncharacterized protein
STRINGMLOC_56050.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.33e-46zinc finger nuclease 3