PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56065.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 202aa    MW: 21934.3 Da    PI: 6.5239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56065.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-11120167355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   + h ++Er+RR+++ + f  L +++P +     kK +K++ L  ++eY+k+L+
  MLOC_56065.2 120 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIEYVKELE 167
                   5799************************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.265117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-9120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-16121179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-15121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-10122171No hitNo description
SMARTSM003531.6E-10123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MYQQEGVPVP GMDQQFAEPP LPGHQEQYYT SPMATPSFHT SRSSNFASFG GSSSLPNLPF  60
GSATVKNELG QPPSSNFLSF GAGQAGTLNF SGGAWQHDGV EGTMQLQAPE RRSRAPANAQ  120
EHVIAERKRR EKLQQQFVSL ATIVPGLKKT DKISLLGSTI EYVKELEDKV RALEEQGSRR  180
SSESTTVFES KCRISAADND AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130ERKRRE
2126131RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56065.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997321e-41AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAC2315121e-41AC231512.1 Oryza minuta clone OM__Ba0045O21, complete sequence.
GenBankAK2881571e-41AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence.
GenBankAP0149591e-41AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-41CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156973.11e-129transcription factor bHLH19-like
TrEMBLA0A287PFC91e-147A0A287PFC9_HORVV; Uncharacterized protein
TrEMBLM0X0I21e-147M0X0I2_HORVV; Uncharacterized protein
STRINGMLOC_56065.21e-148(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-22bHLH family protein