PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_56075.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

LBD

Protein Properties

Length: 165aa MW: 17985.6 Da PI: 8.7626

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_56075.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.1	8.1e-40	56	155	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++C+++p f +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela++ MLOC_56075.1 56 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVHALEAELAAV 152 7***********************************************************************************************9 PP DUF260 98 kee 100 ++e MLOC_56075.1 153 RAE 155 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.114	55	156	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-40	56	153	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MSTASDWQQD HEVGKKIKSE STAEADRMMA AARRSSSLPA AGAGPASTPS FNTMTPCAAC 60 KLLRRRCAQE CPFSPFFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG DAANSLVYEA 120 NLRLRDPVYG CMGAILTLQQ QVHALEAELA AVRAEILKHR YRPAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-41	56	159	11	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-41	56	159	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_56075.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095831	1e-117	FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167556.1	1e-117	LOB domain-containing protein 15-like
Swissprot	Q9AT61	2e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A287EY42	1e-119	A0A287EY42_HORVV; Uncharacterized protein
STRING	MLOC_56075.1	1e-120	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-56	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]