PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56117.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 255aa    MW: 28176.8 Da    PI: 7.0175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56117.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.5e-1186134355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MLOC_56117.5  86 NSHSLAERLRRKKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 134
                   58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1781150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-1081138No hitNo description
Gene3DG3DSA:4.10.280.107.3E-1783150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.4483133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-886134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-1089139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSDEHSGGVK KRKGTNDCIA LLNPSASSKN VGDQQTEVSS QPESNSMERD NRKISPKTQS  60
KEDSSDGDGT KENYVHLRAK RGQATNSHSL AERLRRKKIS ERMKLLQDLV PGCNKITGKA  120
VMLDEIINYV QSLQRQVEFL SMKLATVNPE LGFDIEQILS KQMMLSQDRH LGFYGADPGA  180
SALIAHFNQG MMHPDMICNA SNPVGALHGT IHDISTMNQM PEMWETLQNI PHMNFNPAVA  240
ADSSTNNAGP MKIEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56117.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198221.10.0transcription factor bHLH49-like
RefseqXP_020198222.10.0transcription factor bHLH49-like
RefseqXP_020198223.10.0transcription factor bHLH49-like
SwissprotQ6NKN99e-55BH074_ARATH; Transcription factor bHLH74
TrEMBLF2DAP50.0F2DAP5_HORVV; Predicted protein
STRINGMLOC_56117.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]