PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56124.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 195aa    MW: 22247.7 Da    PI: 10.0723
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56124.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-212282257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  r+R+t+t+ ql++Le+ F + n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  MLOC_56124.1 22 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 82
                  89*****************99**************************************97 PP
2Wus_type_Homeobox1041e-332184265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ar+RWtPt+ Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
       MLOC_56124.1 21 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 84
                       789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-171687IPR009057Homeodomain-like
PROSITE profilePS5007114.8191883IPR001356Homeobox domain
SMARTSM003895.3E-142087IPR001356Homeobox domain
SuperFamilySSF466891.8E-182188IPR009057Homeodomain-like
CDDcd000861.76E-122284No hitNo description
PfamPF000462.2E-192282IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRLGNLYCDP LMVHGGHKIT ARQRWTPTQM QLQILESIFD QGNGTPSKQK IKDITAELSQ  60
HGQISETNVY NWFQNRRARS KRKQAASSLP NNAESEAEGD EESPTDKKPR SDGSQQQSMA  120
MRAHNPDRIS EMHRHFDAAE REQVRGPMYG SSNDSGARSS GGLGQMSFYE NVISNPSMFR  180
KQHLFSRQYK TRFLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56124.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638220.0AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08.
GenBankAK3654190.0AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06.
GenBankAK3657140.0AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188039.11e-123WUSCHEL-related homeobox 8-like
SwissprotQ5QMM32e-81WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A287LWF21e-145A0A287LWF2_HORVV; Uncharacterized protein
STRINGMLOC_56124.21e-130(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-38WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]