PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56247.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 355aa    MW: 38102.4 Da    PI: 10.8004
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56247.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30289346359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ ++p ++++tYegeH h+
  MLOC_56247.1 289 DEYSWRKYGQKPIKGSPHPRGYYKCSTVrGCPARKHVERCVDEPAMLIVTYEGEHSHN 346
                   9************************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.5E-17242285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32275347IPR003657WRKY domain
PROSITE profilePS5081129.482282348IPR003657WRKY domain
SuperFamilySSF1182901.83E-26285347IPR003657WRKY domain
SMARTSM007742.1E-36287347IPR003657WRKY domain
PfamPF031063.9E-26289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEVEVANSA AVESCHKLLA LLSQQQDPAL LRSIASETGE ACAKFRKVVS LLSNGGGGRG  60
GHARGRFSRR RKPVGFLSQK GFLESSSNAP LGMLVSGSAP TPSPSAGSAG QLRPQVGAPP  120
PPPRSLDLVS SSSKSAHQFG PPKMVQPLSV QFQFGATAHR YPFQQQQQQN LQAQMFKRSN  180
SGISLKFDSP SGGTGTISSP RSFMSSLSMD GSVASLDGKP PMRLIGGPAA SDPLNVRQCA  240
PKRRCRGEDG SGKCTTGGKC HCSKRRKLRI KRSIKVPAIS NKISDIPPDE YSWRKYGQKP  300
IKGSPHPRGY YKCSTVRGCP ARKHVERCVD EPAMLIVTYE GEHSHNRLPT QSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19275349275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56247.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747470.0AK374747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163784.10.0protein WRKY1-like
SwissprotQ93WU63e-94WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLF2EF210.0F2EF21_HORVV; Predicted protein
STRINGMLOC_56247.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.16e-57WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]