PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56648.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 198aa    MW: 21508.2 Da    PI: 10.5798
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56648.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-1781136256
                   T--SS--HHHHHHHHHHHHHSSS--H.HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsa.eereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ ++t+eq   Le+ F+ ++ +s+  e+ +LA++lgL+ rqV vWFqNrRa+ k
  MLOC_56648.1  81 RKKLRLTEEQAALLEKSFRAHNVLSHvGEKHDLARQLGLKPRQVEVWFQNRRARTK 136
                   788899**************888886379*************************98 PP
2HD-ZIP_I/II109.52.4e-3581170189
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                   +kk+rl++eq++lLE+sF++++ L++  +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e r+
  MLOC_56648.1  81 RKKLRLTEEQAALLEKSFRAHNVLSHvGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRSELAEARA 170
                   69********************9986379*******************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1660139IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1666139IPR009057Homeodomain-like
PROSITE profilePS5007116.48777138IPR001356Homeobox domain
SMARTSM003899.0E-1279142IPR001356Homeobox domain
PfamPF000461.3E-1481136IPR001356Homeobox domain
CDDcd000861.96E-1281139No hitNo description
PRINTSPR000313.1E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000313.1E-6118134IPR000047Helix-turn-helix motif
PfamPF021834.9E-7138167IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-11138181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSSLTTLSSG SKESLEAEEL VDTRLSLVIG AGSQPPPAPK AAGHVPRNTA RGQHGKRARA  60
VHGGSDVDDD DGGHDAAGRA RKKLRLTEEQ AALLEKSFRA HNVLSHVGEK HDLARQLGLK  120
PRQVEVWFQN RRARTKLKQT ELDCELLRRW CERLSDDNAR LRSELAEARA VLLVGRAQGS  180
SLTGCPSCSR LAGGRRAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RARKKLR
2130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189367.16e-94putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX68e-41HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A446W5L04e-99A0A446W5L0_TRITD; Uncharacterized protein
STRINGMLOC_56648.11e-139(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-32HD-ZIP family protein