PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56648.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 197aa    MW: 21409.1 Da    PI: 10.5798
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56648.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1981135256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ ++t+eq   Le+ F+ ++ +s+ e+ +LA++lgL+ rqV vWFqNrRa+ k
  MLOC_56648.2  81 RKKLRLTEEQAALLEKSFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTK 135
                   788899***********************************************98 PP
2HD-ZIP_I/II114.37.3e-3781169189
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                   +kk+rl++eq++lLE+sF++++ L++ +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e r+
  MLOC_56648.2  81 RKKLRLTEEQAALLEKSFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRSELAEARA 169
                   69*********************************************************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1860138IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1966138IPR009057Homeodomain-like
PROSITE profilePS5007117.63777137IPR001356Homeobox domain
SMARTSM003891.8E-1579141IPR001356Homeobox domain
PfamPF000461.1E-1681135IPR001356Homeobox domain
CDDcd000869.01E-1481138No hitNo description
PRINTSPR000313.1E-6108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000313.1E-6117133IPR000047Helix-turn-helix motif
PfamPF021834.9E-7137166IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-11137180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSSLTTLSSG SKESLEAEEL VDTRLSLVIG AGSQPPPAPK AAGHVPRNTA RGQHGKRARA  60
VHGGSDVDDD DGGHDAAGRA RKKLRLTEEQ AALLEKSFRA HNVLSHGEKH DLARQLGLKP  120
RQVEVWFQNR RARTKLKQTE LDCELLRRWC ERLSDDNARL RSELAEARAV LLVGRAQGSS  180
LTGCPSCSRL AGGRRAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RARKKLR
2129137RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56648.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189356.12e-95putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX61e-42HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A446W5L01e-101A0A446W5L0_TRITD; Uncharacterized protein
STRINGMLOC_56648.11e-112(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-34HD-ZIP family protein