PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56822.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 225aa    MW: 24056.3 Da    PI: 10.5298
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56822.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY856.8e-27139198159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +dD ++WrKYGqK++kgs++pr+YY+C+s   C+++k v+rs  +p+++++tY ++H h 
  MLOC_56822.1 139 VDDLWAWRKYGQKPIKGSPHPRAYYKCSSLrACTARKLVDRSPAEPEALIVTYIDDHCHA 198
                   58**************************998**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.451134200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-26135200IPR003657WRKY domain
SuperFamilySSF1182903.01E-23136200IPR003657WRKY domain
SMARTSM007744.0E-30139199IPR003657WRKY domain
PfamPF031065.8E-21140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDSGDWGLEA VVRSCGGSTV VPGSEAEPEP PAARARRGVA ARVEFVGQRM KVAASSSLYD  60
VLEVPQPPFS ITPSSASHER SMFFSLLSAS TSRQTLPGRK QAGRKPGAGA PTPRRPKRSK  120
KNVVRLVPVA DGGVNNSTVD DLWAWRKYGQ KPIKGSPHPR AYYKCSSLRA CTARKLVDRS  180
PAEPEALIVT YIDDHCHAVP VLINTLAGTA HHPPKSPRGT TASGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-151392001777Probable WRKY transcription factor 4
2lex_A3e-151392001777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180611.12e-76WRKY transcription factor 22-like
TrEMBLA0A287PVK51e-163A0A287PVK5_HORVV; Uncharacterized protein
STRINGMLOC_56822.11e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.23e-28Disease resistance protein (TIR-NBS-LRR class)