PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5684.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 210aa    MW: 23013.1 Da    PI: 9.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5684.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-082777454
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                 a +e+Er RR++++   ++L +l+Pk     +++  ++    L +A  YIk+L
  MLOC_5684.1 27 ARKEVERERRQHMKVLCAKLFSLIPKeH--LSNTNtVTQLGSLDEAASYIKKL 77
                 779***********************54..677777***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-91889IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3152377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-42481No hitNo description
Gene3DG3DSA:4.10.280.101.8E-112792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-52777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-42983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEMQAKEPRG GKRSRMSGGT TAARVVARKE VERERRQHMK VLCAKLFSLI PKEHLSNTNT  60
VTQLGSLDEA ASYIKKLKER IDELHNRRNS AQAMVAARGA SGASTPTTTP TTSGGKGSTE  120
GEKHWEASAP VVEVRQHDDT SMDVVLVCST ERPIMLHQVI TILEEEGAEV VNANHSVAGH  180
QIFYTIHSRA FSSRIGIDVS SVSERLRALV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5684.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538220.0AK353822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003A14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190834.11e-103uncharacterized protein LOC109776583
TrEMBLM0X4021e-152M0X402_HORVV; Uncharacterized protein
STRINGMLOC_5684.31e-137(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-14bHLH family protein