PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56963.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 293aa    MW: 31235.1 Da    PI: 8.5932
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56963.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-18213246134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  MLOC_56963.1 213 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 246
                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.5E-15206269No hitNo description
PROSITE profilePS5011411.332207243IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-16207257IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14211244IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.96E-15212269No hitNo description
PfamPF003207.2E-16213246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDMAQLEWLS GLFDDTSIPH EPAFACAAPI IRASALSANA GVVLPDKMED ALFRSSSPTS  60
VLEDGANNVN VNMNNNSGGS SASSTSSSAS SSSESFSGSG RPWSVPLSPR PEPPVLVIPA  120
RARSKRSRAS AFPTAIRAAV PAPEATILVP TPMFSSTSSY SEEPECIAES NSQPKKKKKA  180
KRPTPPVTSD AEGDADYEEG GGAALPAGEV RRCTHCQIEK TPQWRAGPLG PKTLCNACGV  240
RYKSGRLFPE YRPAASPTFV PAIHSNSHKK VVEMRQKVEP KGDDLLQFIR RRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536490.0AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24.
GenBankAK3566850.0AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165199.11e-165GATA transcription factor 11-like
RefseqXP_020165203.11e-165GATA transcription factor 11-like
TrEMBLM0X4G00.0M0X4G0_HORVV; Uncharacterized protein
STRINGMLOC_56963.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-38GATA family protein