PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57142.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 144aa    MW: 15445.2 Da    PI: 6.6573
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57142.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19.1e-174076135
          GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C+nCg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MLOC_57142.8 40 CQNCGVSSrlTPAMRRGPAGPRTLCNACGLMWANKGT 76
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.4E-113488IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-113888No hitNo description
Gene3DG3DSA:3.30.50.101.6E-143978IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-144076IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404067IPR000679Zinc finger, GATA-type
CDDcd002021.04E-144086No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKRRKGQFAG RADFGDAASS SAACVSAADG EDDHFRESHC QNCGVSSRLT PAMRRGPAGP  60
RTLCNACGLM WANKGTLRSP LNAPKMTVQH PANPSKMESV DDDKAIVCAE HNHTAVKMDS  120
EMSPEQEQKP ELRPATEGDS MADS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57142.8
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767000.0AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187640.12e-89GATA transcription factor 19-like
SwissprotB8AR304e-76GAT19_ORYSI; GATA transcription factor 19
SwissprotQ0DNU14e-76GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A287N7261e-103A0A287N726_HORVV; Uncharacterized protein
TrEMBLF2EKM31e-102F2EKM3_HORVV; Predicted protein
STRINGMLOC_57142.71e-103(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.39e-20GATA-type zinc finger protein with TIFY domain