PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_57243.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRAS

Protein Properties

Length: 326aa MW: 37064.8 Da PI: 7.3679

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57243.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	217.7	5.8e-67	7	313	111	374
GRAS 111 rvHiiDfdi..sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rvkpgEa 201 v i+D++ s++ QW+ +l+ + Rp+gpp+lR+T+v++ + e l +++ L k A++l++ f+f+ v +le+l++++L +++ gEa MLOC_57243.1 7 VVRIVDLSCstSHPWQWLKILHDFHGRPGGPPELRLTVVHE----DIEFLDNMQALLCKQAANLKLFFHFDK-VIGKLETLDFSNLreilKINFGEA 98 678997622689***********************....9**********************.688999999998843335555* PP GRAS 202 laVnlvlqlhrll...........................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255 ++++++lq+hrll + + +++ ++L++++ l+Pk++v++eq+adhn++ F + MLOC_57243.1 99 VVISCALQMHRLLavddsvtrdgiaqlqqmanmarlkqmacparspastlnypqtpSPQRQIPRLLVSFLSAIRALEPKIIVMMEQDADHNTPLFHD 195 **************************************************9877555556667789************************* PP GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 rf+e+++yy+alfdsl+a ++++ +r+ vEr+llg+ei+n++ ceg +r erhe+l++W++ ++++ vpls +a + k l ++ + + + MLOC_57243.1 196 RFTETVHYYAALFDSLNAV-GAANPQRARVERVLLGEEIKNILVCEGVQRHERHEKLSQWEMHMQRCQVDHVPLSFEAIREGKERLMSYGLRQCKCD 291 ************887.899***************************************************************999 PP GRAS 353 eesgslvlgWkdrpLvsvSaWr 374 e ++ l+l+W +L+s+SaWr MLOC_57243.1 292 EGNADLLLCWGATRLYSISAWR 313 *******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.911	1	293	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-64	7	313	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MMVALQVVRI VDLSCSTSHP WQWLKILHDF HGRPGGPPEL RLTVVHEDIE FLDNMQALLC 60 KQAANLKLFF HFDKVIGKLE TLDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDSVTRD 120 GIAQLQQMAN MARLKQMACP ARSPASTLNY PQTPSPQRQI PRLLVSFLSA IRALEPKIIV 180 MMEQDADHNT PLFHDRFTET VHYYAALFDS LNAVGAANPQ RARVERVLLG EEIKNILVCE 240 GVQRHERHEK LSQWEMHMQR CQVDHVPLSF EAIREGKERL MSYGLRQCKC DEGNADLLLC 300 WGATRLYSIS AWRPHSQNAA PNNVAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-17	171	316	238	382	Protein SCARECROW
5b3h_A	5e-17	171	316	237	381	Protein SCARECROW
5b3h_D	5e-17	171	316	237	381	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57243.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375919	0.0	AK375919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3109N01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187419.1	0.0	scarecrow-like protein 3
Refseq	XP_020187421.1	0.0	scarecrow-like protein 3
Refseq	XP_020187422.1	0.0	scarecrow-like protein 3
TrEMBL	M0X5P3	0.0	M0X5P3_HORVV; Uncharacterized protein
STRING	MLOC_57243.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-61	scarecrow-like 3