PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57503.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family SBP
Protein Properties Length: 198aa    MW: 21713 Da    PI: 8.1588
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57503.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP44.25.2e-1411414878
                  SEEETTT--SS--S-STTTT-------S--- CS
           SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                  rfh l+efD++k+sCr+rLa+hn+rrrk+++
  MLOC_57503.1 11 RFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 41
                  9***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.793139IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.2E-101142IPR004333Transcription factor, SBP-box
PfamPF031102.8E-71138IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
FVLTCFHFSF RFHLLDEFDD AKKSCRKRLA DHNRRRRKSK PSDADAADKR RTQASKAAAS  60
TKGKAAGSSS KSTGTGDGMD IQVQLGSGDL SKDQDETMGQ GEVVKEMQVD PKGKASMQLQ  120
QQQQQGHHVH GLHLQSQHGF PFPSTSAGSC FPQSQAVSST DNTSNIGQVQ QEQLGLGFHQ  180
HSNILQLGQA MFDLDFDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13350RRRRKSKPSDADAADKRR
23439RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000269|PubMed:17594063}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478830.0KF447883.1 Triticum aestivum squamosa promoter-binding-like protein 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192131.11e-105squamosa promoter-binding-like protein 8
SwissprotQ01KM74e-66SPL8_ORYSI; Squamosa promoter-binding-like protein 8
SwissprotQ7XPY14e-66SPL8_ORYSJ; Squamosa promoter-binding-like protein 8
TrEMBLA0A481XT131e-122A0A481XT13_HORVU; Mutant liguleless1-like protein
TrEMBLA0A481XWM61e-122A0A481XWM6_HORVV; Mutant liguleless1-like protein
TrEMBLQ333M01e-123Q333M0_HORVU; Liguleless-like protein (Fragment)
STRINGMLOC_57503.21e-131(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-11squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]